PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_59910_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 110aa    MW: 12624.3 Da    PI: 11.6495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_59910_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-18455256
                                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                         +y+GVr+++ +g ++AeIr p + g   r++lg++ t+e+Aa a+++a+ kl+g+
  cra_locus_59910_iso_1_len_330_ver_3  4 RYRGVRRRP-WGTFAAEIRNPMKKG--SRIWLGTYETPEDAAIAYDRAAFKLRGA 55
                                         7********.**********86643..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.3E-23463IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-31463IPR001471AP2/ERF domain
SMARTSM003803.9E-36468IPR001471AP2/ERF domain
PROSITE profilePS5103223.841462IPR001471AP2/ERF domain
PfamPF008471.3E-12454IPR001471AP2/ERF domain
PRINTSPR003675.0E-13516IPR001471AP2/ERF domain
CDDcd000188.84E-231264No hitNo description
PRINTSPR003675.0E-134464IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
XWRRYRGVRR RPWGTFAAEI RNPMKKGSRI WLGTYETPED AAIAYDRAAF KLRGAKARLN  60
FPNLLGSTAI DHNPVRVVQD QGGRIRIILA VNNSRSWNEV CIKGKYFVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-28362463ATERF1
3gcc_A8e-28362463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094418.19e-38PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K13e-35ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A068UMA54e-36A0A068UMA5_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000914743e-34(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165